#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00698/HGDP00698.cram --algo AlignmentStat HGDP/HGDP00698/QCmetrics/HGDP00698.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	420261709	420261709	1.000000	0	418149832	0.994975	62433250246	390583804	58644983465	57086035882	0.000000	0.005169	0.004452	0.000220	151.000000	416188962	0.995311	0	0.499937	0.022152	0.000016	
SECOND_OF_PAIR	420261709	420261709	1.000000	0	416284604	0.990537	60968814173	387798089	57369373059	53582084642	0.000000	0.010615	0.009876	0.000211	151.000000	416188962	0.999770	0	0.499434	0.023505	0.004600	
PAIR	840523418	840523418	1.000000	0	834434436	0.992756	123402064419	778381893	116014356524	110668120524	0.000000	0.007859	0.007134	0.000216	151.000000	832377924	0.997535	0	0.499686	0.022827	0.002308