#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00699/HGDP00699.cram --algo AlignmentStat HGDP/HGDP00699/QCmetrics/HGDP00699.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	407568888	407568888	1.000000	0	407208615	0.999116	60860038590	381777795	57341191531	56010065093	0.000000	0.004878	0.004229	0.000219	151.000000	404812678	0.994116	0	0.499971	0.020119	0.000003	
SECOND_OF_PAIR	407568888	407568888	1.000000	0	404848509	0.993325	59273298210	378494202	55927105482	52186435083	0.000000	0.011110	0.010440	0.000210	151.000000	404812678	0.999911	0	0.499519	0.021465	0.000641	
PAIR	815137776	815137776	1.000000	0	812057124	0.996221	120133336800	760271997	113268297013	108196500176	0.000000	0.007953	0.007296	0.000215	151.000000	809625356	0.997005	0	0.499745	0.020790	0.000322