#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00699/HGDP00699.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00699/QCmetrics/HGDP00699.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.2879	17.204	0	0	0	0.048315	0.0066712	0.092601	0.040687	0.40942	0.5977	0.22692	0.04588	0.028321	0.021616	0.017936	0.015488	0.013797	0.011579	0.010195	0.0092232	0.0084547	0.0077893	0.0072105	0.0066337	0.13046	1	

coverage	high_quality_coverage_count	
0	18272757
1	3202919
2	621814
3	271891
4	182542
5	127867
6	97736
7	75584
8	61859
9	51991
10	41637
11	36558
12	30521
13	26220
14	23527
15	21433
16	18953
17	16841
18	15726
19	14044
20	13064
21	12447
22	11490
23	10810
24	10036
25	9266
26	8552
27	7801
28	7321
29	7042
30	6559
31	6413
32	5932
33	5718
34	5321
35	4971
36	4623
37	4563
38	4297
39	4020
40	3942
41	3796
42	3612
43	3346
44	3216
45	3138
46	3022
47	2968
48	2830
49	2847
50	2605
51	2596
52	2434
53	2415
54	2304
55	2241
56	2125
57	2157
58	1991
59	2101
60	2090
61	1986
62	1944
63	1913
64	1812
65	1704
66	1676
67	1677
68	1672
69	1690
70	1613
71	1666
72	1589
73	1632
74	1548
75	1558
76	1620
77	1537
78	1505
79	1461
80	1348
81	1414
82	1410
83	1361
84	1359
85	1372
86	1374
87	1412
88	1327
89	1302
90	1267
91	1369
92	1335
93	1427
94	1428
95	1376
96	1425
97	1354
98	1354
99	1300
100	1302
101	1249
102	1234
103	1261
104	1230
105	1173
106	1210
107	1191
108	1119
109	1231
110	1151
111	1112
112	1159
113	1130
114	1082
115	1118
116	1044
117	1091
118	1037
119	991
120	965
121	950
122	950
123	936
124	937
125	904
126	872
127	889
128	896
129	895
130	834
131	841
132	845
133	806
134	808
135	798
136	825
137	778
138	744
139	738
140	765
141	760
142	757
143	726
144	721
145	669
146	656
147	662
148	613
149	680
150	642
151	659
152	642
153	679
154	657
155	638
156	659
157	640
158	606
159	638
160	642
161	619
162	625
163	612
164	654
165	592
166	607
167	626
168	601
169	630
170	628
171	615
172	601
173	596
174	604
175	614
176	636
177	599
178	616
179	598
180	617
181	575
182	594
183	578
184	592
185	565
186	547
187	562
188	526
189	534
190	555
191	529
192	508
193	478
194	487
195	501
196	441
197	489
198	447
199	445
200	420
201	381
202	415
203	395
204	391
205	360
206	327
207	398
208	389
209	354
210	350
211	327
212	334
213	352
214	353
215	329
216	333
217	283
218	313
219	261
220	285
221	264
222	314
223	273
224	276
225	236
226	295
227	266
228	250
229	241
230	277
231	294
232	225
233	233
234	270
235	252
236	237
237	236
238	239
239	248
240	241
241	234
242	238
243	246
244	234
245	270
246	224
247	234
248	244
249	237
250	65438