#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00700/HGDP00700.cram --algo AlignmentStat HGDP/HGDP00700/QCmetrics/HGDP00700.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	434141350	434141350	1.000000	0	433852669	0.999335	64895722430	408797017	61406689733	59999351784	0.000000	0.004799	0.004218	0.000214	151.000000	432312635	0.996450	0	0.500034	0.018201	0.000001	
SECOND_OF_PAIR	434141350	434141350	1.000000	0	432346214	0.995865	63525706629	406368744	60198011891	56359048738	0.000000	0.010700	0.010086	0.000206	151.000000	432312635	0.999922	0	0.499472	0.019643	0.000452	
PAIR	868282700	868282700	1.000000	0	866198883	0.997600	128421429059	815165761	121604701624	116358400522	0.000000	0.007718	0.007123	0.000210	151.000000	864625270	0.998183	0	0.499754	0.018921	0.000227