#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00701/HGDP00701.cram --algo AlignmentStat HGDP/HGDP00701/QCmetrics/HGDP00701.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391666861	391666861	1.000000	0	391495411	0.999562	58496727284	367270596	55158300924	53873653751	0.000000	0.004926	0.004241	0.000226	151.000000	390041525	0.996286	0	0.499982	0.021324	0.000001	
SECOND_OF_PAIR	391666861	391666861	1.000000	0	390068694	0.995920	57307089859	365081631	54131213716	50965447570	0.000000	0.009694	0.008981	0.000217	151.000000	390041525	0.999930	0	0.499475	0.022752	0.000238	
PAIR	783333722	783333722	1.000000	0	781564105	0.997741	115803817143	732352227	109289514640	104839101321	0.000000	0.007285	0.006589	0.000222	151.000000	780083050	0.998105	0	0.499729	0.022037	0.000119