#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00708/HGDP00708.cram --algo AlignmentStat HGDP/HGDP00708/QCmetrics/HGDP00708.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	426298632	426298632	1.000000	0	425898042	0.999060	63695453629	399691057	60032356172	58557405059	0.000000	0.004940	0.004319	0.000216	151.000000	424048349	0.995657	0	0.500121	0.018246	0.000002	
SECOND_OF_PAIR	426298632	426298632	1.000000	0	424078102	0.994791	62266460216	397016863	58782634824	55014938109	0.000000	0.010671	0.010015	0.000207	151.000000	424048349	0.999930	0	0.499352	0.019399	0.000760	
PAIR	852597264	852597264	1.000000	0	849976144	0.996926	125961913845	796707920	118814990996	113572343168	0.000000	0.007773	0.007137	0.000211	151.000000	848096698	0.997789	0	0.499737	0.018821	0.000381