#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00710/HGDP00710.cram --algo AlignmentStat HGDP/HGDP00710/QCmetrics/HGDP00710.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376521750	376521750	1.000000	0	376381435	0.999627	56301080722	351739939	52787310302	50970459087	0.000000	0.004341	0.003712	0.000217	151.000000	375999842	0.998986	0	0.499190	0.017980	0.000081	
SECOND_OF_PAIR	376521750	376521750	1.000000	0	376017499	0.998661	55951309693	351138427	52453862658	49887894766	0.000000	0.006059	0.005428	0.000221	151.000000	375999842	0.999953	0	0.499211	0.018250	0.000078	
PAIR	753043500	753043500	1.000000	0	752398934	0.999144	112252390415	702878366	105241172960	100858353853	0.000000	0.005198	0.004567	0.000219	151.000000	751999684	0.999469	0	0.499201	0.018115	0.000080