#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00711/HGDP00711.cram --algo AlignmentStat HGDP/HGDP00711/QCmetrics/HGDP00711.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382413811	382413811	1.000000	0	381533851	0.997699	56640915994	355704214	53042208269	51265850505	0.000000	0.004516	0.003835	0.000211	151.000000	375548577	0.984313	0	0.498606	0.018913	0.000075	
SECOND_OF_PAIR	382413811	382413811	1.000000	0	375569227	0.982102	55924740713	350488655	52412671533	50056871261	0.000000	0.005601	0.004925	0.000206	151.000000	375548577	0.999945	0	0.498940	0.019721	0.000068	
PAIR	764827622	764827622	1.000000	0	757103078	0.989900	112565656707	706192869	105454879802	101322721766	0.000000	0.005055	0.004377	0.000209	151.000000	751097154	0.992067	0	0.498771	0.019314	0.000072