#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00712/HGDP00712.cram --algo AlignmentStat HGDP/HGDP00712/QCmetrics/HGDP00712.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	396549613	396549613	1.000000	0	396174485	0.999054	59012042652	370213767	55483165959	54156995554	0.000000	0.005158	0.004409	0.000235	151.000000	394559322	0.995923	0	0.499877	0.021989	0.000002	
SECOND_OF_PAIR	396549613	396549613	1.000000	0	394592098	0.995064	57640272638	367931863	54322978446	50943563628	0.000000	0.010265	0.009508	0.000223	151.000000	394559322	0.999917	0	0.499632	0.023542	0.000645	
PAIR	793099226	793099226	1.000000	0	790766583	0.997059	116652315290	738145630	109806144405	105100559182	0.000000	0.007682	0.006932	0.000229	151.000000	789118644	0.997916	0	0.499755	0.022764	0.000324