#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00714/HGDP00714.cram --algo AlignmentStat HGDP/HGDP00714/QCmetrics/HGDP00714.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382278533	382278533	1.000000	0	381344208	0.997556	56630179737	356059111	53099555667	51293746282	0.000000	0.004917	0.004247	0.000210	151.000000	375409540	0.984438	0	0.498023	0.019799	0.000070	
SECOND_OF_PAIR	382278533	382278533	1.000000	0	375430762	0.982087	55898722072	350771734	52441527746	50054057023	0.000000	0.006100	0.005426	0.000206	151.000000	375409540	0.999943	0	0.498241	0.020634	0.000063	
PAIR	764557066	764557066	1.000000	0	756774970	0.989821	112528901809	706830845	105541083413	101347803305	0.000000	0.005505	0.004833	0.000208	151.000000	750819080	0.992130	0	0.498131	0.020213	0.000066