#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00716/HGDP00716.cram --algo AlignmentStat HGDP/HGDP00716/QCmetrics/HGDP00716.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	462256141	462256141	1.000000	0	461984313	0.999412	69008341589	432522084	64947140209	63634799702	0.000000	0.004608	0.003877	0.000228	151.000000	459053716	0.993657	0	0.499905	0.020473	0.000001	
SECOND_OF_PAIR	462256141	462256141	1.000000	0	459087232	0.993145	67092401615	428734914	63270552351	59093504332	0.000000	0.011159	0.010417	0.000215	151.000000	459053716	0.999927	0	0.499629	0.021936	0.000330	
PAIR	924512282	924512282	1.000000	0	921071545	0.996278	136100743204	861256998	128217692560	122728304034	0.000000	0.007837	0.007104	0.000222	151.000000	918107432	0.996782	0	0.499767	0.021202	0.000165