#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00719/HGDP00719.cram --algo AlignmentStat HGDP/HGDP00719/QCmetrics/HGDP00719.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	458308486	458308486	1.000000	0	456938971	0.997012	67769774315	428696004	63900572162	61751895857	0.000000	0.006087	0.005461	0.000229	151.000000	455379093	0.996586	0	0.499891	0.020557	0.000006	
SECOND_OF_PAIR	458308486	458308486	1.000000	0	455440389	0.993742	66262024885	426251725	62623433204	58164559550	0.000000	0.011148	0.010485	0.000216	151.000000	455379093	0.999865	0	0.499669	0.022784	0.002606	
PAIR	916616972	916616972	1.000000	0	912379360	0.995377	134031799200	854947729	126524005366	119916455407	0.000000	0.008589	0.007948	0.000223	151.000000	910758186	0.998223	0	0.499780	0.021669	0.001306