#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00721/HGDP00721.cram --algo AlignmentStat HGDP/HGDP00721/QCmetrics/HGDP00721.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	441179737	441179737	1.000000	0	440616227	0.998723	65727523373	412171477	61826986755	60502609123	0.000000	0.005278	0.004556	0.000233	151.000000	439311318	0.997038	0	0.499952	0.022443	0.000003	
SECOND_OF_PAIR	441179737	441179737	1.000000	0	439344281	0.995840	64360773451	410061200	60693250101	57324737586	0.000000	0.009724	0.008971	0.000221	151.000000	439311318	0.999925	0	0.499624	0.024867	0.001060	
PAIR	882359474	882359474	1.000000	0	879960508	0.997281	130088296824	822232677	122520236856	117827346709	0.000000	0.007478	0.006743	0.000227	151.000000	878622636	0.998480	0	0.499789	0.023653	0.000531