#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00723/HGDP00723.cram --algo AlignmentStat HGDP/HGDP00723/QCmetrics/HGDP00723.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	332886154	332886154	1.000000	0	332485948	0.998798	49464007631	311304252	46474771771	44531480253	0.000000	0.005198	0.004597	0.000207	151.000000	327879468	0.986145	0	0.498677	0.018127	0.000080	
SECOND_OF_PAIR	332886154	332886154	1.000000	0	327895826	0.985009	48495537093	306889560	45570902260	42477594881	0.000000	0.008416	0.007820	0.000204	151.000000	327879468	0.999950	0	0.498885	0.019119	0.000076	
PAIR	665772308	665772308	1.000000	0	660381774	0.991903	97959544724	618193812	92045674031	87009075134	0.000000	0.006791	0.006193	0.000206	151.000000	655758936	0.993000	0	0.498780	0.018620	0.000078