#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00724/HGDP00724.cram --algo AlignmentStat HGDP/HGDP00724/QCmetrics/HGDP00724.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	322581557	322581557	1.000000	0	322067791	0.998407	47968778853	300951678	44998555881	43070352864	0.000000	0.005463	0.004801	0.000209	151.000000	316151236	0.981629	0	0.498826	0.018355	0.000087	
SECOND_OF_PAIR	322581557	322581557	1.000000	0	316167612	0.980117	46698848807	295252542	43822692293	40653148162	0.000000	0.009177	0.008519	0.000202	151.000000	316151236	0.999948	0	0.499039	0.019150	0.000081	
PAIR	645163114	645163114	1.000000	0	638235403	0.989262	94667627660	596204220	88821248174	83723501026	0.000000	0.007295	0.006635	0.000206	151.000000	632302472	0.990704	0	0.498931	0.018749	0.000084