#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00726/HGDP00726.cram --algo AlignmentStat HGDP/HGDP00726/QCmetrics/HGDP00726.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369936265	369936265	1.000000	0	369355559	0.998430	55036294925	344899165	51588982676	49795826865	0.000000	0.004805	0.004128	0.000213	151.000000	364820806	0.987723	0	0.498347	0.019054	0.000067	
SECOND_OF_PAIR	369936265	369936265	1.000000	0	364841002	0.986227	54302420324	340674302	50913419856	48139642320	0.000000	0.006780	0.006102	0.000207	151.000000	364820806	0.999945	0	0.498729	0.019800	0.000062	
PAIR	739872530	739872530	1.000000	0	734196561	0.992328	109338715249	685573467	102502402532	97935469185	0.000000	0.005786	0.005108	0.000210	151.000000	729641612	0.993796	0	0.498537	0.019425	0.000065