#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00727/HGDP00727.cram --algo AlignmentStat HGDP/HGDP00727/QCmetrics/HGDP00727.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378692086	378692086	1.000000	0	378292372	0.998944	56510991679	353281987	53037231078	51596584219	0.000000	0.005262	0.004544	0.000217	151.000000	376749649	0.995922	0	0.500007	0.020802	0.000003	
SECOND_OF_PAIR	378692086	378692086	1.000000	0	376784159	0.994962	55145526737	350931699	51845927698	48216217564	0.000000	0.011173	0.010429	0.000209	151.000000	376749649	0.999908	0	0.499367	0.022221	0.000815	
PAIR	757384172	757384172	1.000000	0	755076531	0.996953	111656518416	704213686	104883158776	99812801783	0.000000	0.008181	0.007453	0.000213	151.000000	753499298	0.997911	0	0.499687	0.021510	0.000409