#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00729/HGDP00729.cram --algo AlignmentStat HGDP/HGDP00729/QCmetrics/HGDP00729.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	442740789	442740789	1.000000	0	442431116	0.999301	66123665430	412380569	61927196174	60446298973	0.000000	0.004950	0.004185	0.000221	151.000000	440657491	0.995991	0	0.500039	0.020619	0.000002	
SECOND_OF_PAIR	442740789	442740789	1.000000	0	440688540	0.995365	64760610058	409865911	60762145088	57261494996	0.000000	0.009967	0.009164	0.000213	151.000000	440657491	0.999930	0	0.499376	0.021751	0.000539	
PAIR	885481578	885481578	1.000000	0	883119656	0.997333	130884275488	822246480	122689341262	117707793969	0.000000	0.007433	0.006650	0.000217	151.000000	881314982	0.997956	0	0.499708	0.021184	0.000270