#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00730/HGDP00730.cram --algo AlignmentStat HGDP/HGDP00730/QCmetrics/HGDP00730.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	445078553	445078553	1.000000	0	444132614	0.997875	66369804058	414167557	62208899833	60709865306	0.000000	0.005381	0.004649	0.000224	151.000000	442656016	0.996675	0	0.499960	0.021169	0.000006	
SECOND_OF_PAIR	445078553	445078553	1.000000	0	442704271	0.994665	65000827591	411864090	61042344649	57211833594	0.000000	0.010510	0.009743	0.000214	151.000000	442656016	0.999891	0	0.499485	0.022384	0.001874	
PAIR	890157106	890157106	1.000000	0	886836885	0.996270	131370631649	826031647	123251244482	117921698900	0.000000	0.007918	0.007171	0.000219	151.000000	885312032	0.998281	0	0.499723	0.021776	0.000940