#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00734/HGDP00734.cram --algo AlignmentStat HGDP/HGDP00734/QCmetrics/HGDP00734.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409553370	409553370	1.000000	0	408819901	0.998209	61101582930	382502877	57435307629	55897212624	0.000000	0.005137	0.004436	0.000216	151.000000	406812989	0.995091	0	0.500021	0.020392	0.000007	
SECOND_OF_PAIR	409553370	409553370	1.000000	0	406860474	0.993425	59690673729	379659141	56186031109	52413026091	0.000000	0.010699	0.009962	0.000207	151.000000	406812989	0.999883	0	0.499389	0.021662	0.001532	
PAIR	819106740	819106740	1.000000	0	815680375	0.995817	120792256659	762162018	113621338738	108310238715	0.000000	0.007885	0.007169	0.000211	151.000000	813625978	0.997481	0	0.499705	0.021025	0.000769