#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00735/HGDP00735.cram --algo AlignmentStat HGDP/HGDP00735/QCmetrics/HGDP00735.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	400674025	400674025	1.000000	0	400278131	0.999012	59837486683	376694317	56582292781	55271690374	0.000000	0.004891	0.004250	0.000219	151.000000	398328225	0.995129	0	0.499900	0.019914	0.000003	
SECOND_OF_PAIR	400674025	400674025	1.000000	0	398364814	0.994237	58492957980	373956385	55376871550	51861903612	0.000000	0.010618	0.009954	0.000209	151.000000	398328225	0.999908	0	0.499567	0.021030	0.000732	
PAIR	801348050	801348050	1.000000	0	798642945	0.996624	118330444663	750650702	111959164331	107133593986	0.000000	0.007721	0.007071	0.000214	151.000000	796656450	0.997513	0	0.499734	0.020471	0.000367