#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00736/HGDP00736.cram --algo AlignmentStat HGDP/HGDP00736/QCmetrics/HGDP00736.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	469431572	469431572	1.000000	0	469219921	0.999549	70115294280	439618727	66032713977	64500541354	0.000000	0.005041	0.004321	0.000225	151.000000	467492753	0.996319	0	0.499919	0.021075	0.000001	
SECOND_OF_PAIR	469431572	469431572	1.000000	0	467524419	0.995937	68610249228	436984813	64717549578	60493176321	0.000000	0.011067	0.010341	0.000215	151.000000	467492753	0.999932	0	0.499556	0.022699	0.000254	
PAIR	938863144	938863144	1.000000	0	936744340	0.997743	138725543508	876603540	130750263555	124993717675	0.000000	0.008021	0.007301	0.000220	151.000000	934985506	0.998122	0	0.499738	0.021885	0.000127