#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00738/HGDP00738.cram --algo AlignmentStat HGDP/HGDP00738/QCmetrics/HGDP00738.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376445032	376445032	1.000000	0	376031695	0.998902	56205854482	354131866	53166527987	51723250657	0.000000	0.005138	0.004538	0.000216	151.000000	374406988	0.995679	0	0.500048	0.018634	0.000004	
SECOND_OF_PAIR	376445032	376445032	1.000000	0	374439830	0.994673	54824889630	351669360	51931953106	48231828841	0.000000	0.011226	0.010602	0.000208	151.000000	374406988	0.999912	0	0.499394	0.020065	0.000886	
PAIR	752890064	752890064	1.000000	0	750471525	0.996788	111030744112	705801226	105098481093	99955079498	0.000000	0.008144	0.007534	0.000212	151.000000	748813976	0.997791	0	0.499721	0.019348	0.000445