#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00739/HGDP00739.cram --algo AlignmentStat HGDP/HGDP00739/QCmetrics/HGDP00739.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	419582217	419582217	1.000000	0	418147431	0.996580	62503413400	392099729	58880729186	57433683958	0.000000	0.005336	0.004693	0.000221	151.000000	416656218	0.996434	0	0.499940	0.019621	0.000014	
SECOND_OF_PAIR	419582217	419582217	1.000000	0	416717383	0.993172	61228945079	389847586	57771791253	54162332256	0.000000	0.010370	0.009691	0.000212	151.000000	416656218	0.999853	0	0.499506	0.021198	0.003102	
PAIR	839164434	839164434	1.000000	0	834864814	0.994876	123732358479	781947315	116652520439	111596016214	0.000000	0.007827	0.007168	0.000216	151.000000	833312436	0.998141	0	0.499724	0.020408	0.001558