#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00740/HGDP00740.cram --algo AlignmentStat HGDP/HGDP00740/QCmetrics/HGDP00740.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424347898	424347898	1.000000	0	423661842	0.998383	63323890550	398708592	59866258488	58339126060	0.000000	0.005106	0.004471	0.000215	151.000000	421504913	0.994909	0	0.499996	0.018813	0.000005	
SECOND_OF_PAIR	424347898	424347898	1.000000	0	421551861	0.993411	61756160801	395678000	58461589597	54379862696	0.000000	0.011182	0.010527	0.000206	151.000000	421504913	0.999889	0	0.499472	0.020092	0.001369	
PAIR	848695796	848695796	1.000000	0	845213703	0.995897	125080051351	794386592	118327848085	112718988756	0.000000	0.008105	0.007463	0.000211	151.000000	843009826	0.997393	0	0.499735	0.019451	0.000687