#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00744/HGDP00744.cram --algo AlignmentStat HGDP/HGDP00744/QCmetrics/HGDP00744.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391422135	391422135	1.000000	0	389342894	0.994688	58189175037	366037400	54956895324	53630984621	0.000000	0.005032	0.004384	0.000227	151.000000	387939022	0.996394	0	0.500104	0.020261	0.000009	
SECOND_OF_PAIR	391422135	391422135	1.000000	0	388024845	0.991321	57028729735	363910743	53937692420	50780374943	0.000000	0.009918	0.009236	0.000219	151.000000	387939022	0.999779	0	0.499392	0.022256	0.004888	
PAIR	782844270	782844270	1.000000	0	777367739	0.993004	115217904772	729948143	108894587744	104411359564	0.000000	0.007451	0.006787	0.000223	151.000000	775878044	0.998084	0	0.499749	0.021257	0.002448