#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00745/HGDP00745.cram --algo AlignmentStat HGDP/HGDP00745/QCmetrics/HGDP00745.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	407253810	407253810	1.000000	0	406866817	0.999050	60764998509	381434440	57264260951	55689199656	0.000000	0.005202	0.004524	0.000217	151.000000	404470183	0.994110	0	0.499981	0.020887	0.000003	
SECOND_OF_PAIR	407253810	407253810	1.000000	0	404504827	0.993250	59174917447	378109706	55844156910	51810249969	0.000000	0.011386	0.010693	0.000208	151.000000	404470183	0.999914	0	0.499406	0.022176	0.000725	
PAIR	814507620	814507620	1.000000	0	811371644	0.996150	119939915956	759544146	113108417861	107499449625	0.000000	0.008253	0.007570	0.000213	151.000000	808940366	0.997003	0	0.499694	0.021530	0.000364