#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00746/HGDP00746.cram --algo AlignmentStat HGDP/HGDP00746/QCmetrics/HGDP00746.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403637241	403637241	1.000000	0	403352026	0.999293	60280586596	378242854	56810126074	55469548358	0.000000	0.004969	0.004307	0.000222	151.000000	401354630	0.995048	0	0.499914	0.020460	0.000002	
SECOND_OF_PAIR	403637241	403637241	1.000000	0	401388077	0.994428	58859927816	375427981	55555153972	51922529933	0.000000	0.010920	0.010231	0.000212	151.000000	401354630	0.999917	0	0.499543	0.021599	0.000449	
PAIR	807274482	807274482	1.000000	0	804740103	0.996861	119140514412	753670835	112365280046	107392078291	0.000000	0.007909	0.007236	0.000217	151.000000	802709260	0.997476	0	0.499729	0.021028	0.000225