#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00747/HGDP00747.cram --algo AlignmentStat HGDP/HGDP00747/QCmetrics/HGDP00747.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369872875	369872875	1.000000	0	369320149	0.998506	55096438523	343744988	51541826350	50194115421	0.000000	0.005063	0.004297	0.000223	151.000000	367632106	0.995429	0	0.499820	0.020485	0.000006	
SECOND_OF_PAIR	369872875	369872875	1.000000	0	367668907	0.994041	53686980749	341341388	50326424169	46687803738	0.000000	0.011114	0.010318	0.000213	151.000000	367632106	0.999900	0	0.499660	0.022091	0.001147	
PAIR	739745750	739745750	1.000000	0	736989056	0.996273	108783419272	685086376	101868250519	96881919159	0.000000	0.008049	0.007271	0.000218	151.000000	735264212	0.997660	0	0.499740	0.021286	0.000577