#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00748/HGDP00748.cram --algo AlignmentStat HGDP/HGDP00748/QCmetrics/HGDP00748.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	435799676	435799676	1.000000	0	435372625	0.999020	65032304728	407052834	61103880510	59738297205	0.000000	0.004839	0.004097	0.000222	151.000000	432801806	0.994095	0	0.499984	0.020824	0.000002	
SECOND_OF_PAIR	435799676	435799676	1.000000	0	432835027	0.993197	63215792344	403474805	59505620778	55495165678	0.000000	0.011143	0.010365	0.000214	151.000000	432801806	0.999923	0	0.499360	0.023060	0.000726	
PAIR	871599352	871599352	1.000000	0	868207652	0.996109	128248097072	810527639	120609501288	115233462883	0.000000	0.007946	0.007189	0.000218	151.000000	865603612	0.997001	0	0.499673	0.021939	0.000364