#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00751/HGDP00751.cram --algo AlignmentStat HGDP/HGDP00751/QCmetrics/HGDP00751.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	442458514	442458514	1.000000	0	441888857	0.998713	65967461393	412852316	61905480930	60121121033	0.000000	0.005547	0.004858	0.000218	151.000000	440249688	0.996291	0	0.499804	0.019510	0.000003	
SECOND_OF_PAIR	442458514	442458514	1.000000	0	440287059	0.995092	64383030657	410345033	60563781268	56262651130	0.000000	0.010995	0.010250	0.000209	151.000000	440249688	0.999915	0	0.499676	0.021065	0.000997	
PAIR	884917028	884917028	1.000000	0	882175916	0.996902	130350492050	823197349	122469262198	116383772163	0.000000	0.008238	0.007524	0.000214	151.000000	880499376	0.998100	0	0.499740	0.020286	0.000500