#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00752/HGDP00752.cram --algo AlignmentStat HGDP/HGDP00752/QCmetrics/HGDP00752.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	433004757	433004757	1.000000	0	432729343	0.999364	64717384239	404618049	60772373680	59375302297	0.000000	0.004721	0.004013	0.000220	151.000000	431118661	0.996278	0	0.500112	0.019497	0.000002	
SECOND_OF_PAIR	433004757	433004757	1.000000	0	431150662	0.995718	63364711401	402216165	59596515937	56019196230	0.000000	0.009857	0.009103	0.000212	151.000000	431118661	0.999926	0	0.499359	0.020653	0.000471	
PAIR	866009514	866009514	1.000000	0	863880005	0.997541	128082095640	806834214	120368889617	115394498527	0.000000	0.007262	0.006533	0.000216	151.000000	862237322	0.998098	0	0.499736	0.020074	0.000236