#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00754/HGDP00754.cram --algo AlignmentStat HGDP/HGDP00754/QCmetrics/HGDP00754.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	422344141	422344141	1.000000	0	421464437	0.997917	62765649647	395820103	59216755105	56940073750	0.000000	0.006985	0.006378	0.000220	151.000000	419473349	0.995276	0	0.499884	0.018048	0.000004	
SECOND_OF_PAIR	422344141	422344141	1.000000	0	419515692	0.993303	61041506174	393097317	57669107715	52484490852	1.000000	0.014039	0.013449	0.000212	151.000000	419473349	0.999899	0	0.499662	0.019298	0.001752	
PAIR	844688282	844688282	1.000000	0	840980129	0.995610	123807155821	788917420	116885862820	109424564602	0.000000	0.010463	0.009866	0.000216	151.000000	838946698	0.997582	0	0.499773	0.018672	0.000878