#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00761/HGDP00761.cram --algo AlignmentStat HGDP/HGDP00761/QCmetrics/HGDP00761.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	435936262	435936262	1.000000	0	435551295	0.999117	64996878007	408667513	61267099013	59450310358	0.000000	0.005606	0.004973	0.000222	151.000000	433843004	0.996078	0	0.499763	0.019575	0.000003	
SECOND_OF_PAIR	435936262	435936262	1.000000	0	433877104	0.995276	63442652676	406123000	59937176627	55657078373	0.000000	0.010988	0.010329	0.000211	151.000000	433843004	0.999921	0	0.499690	0.021018	0.000594	
PAIR	871872524	871872524	1.000000	0	869428399	0.997197	128439530683	814790513	121204275640	115107388731	0.000000	0.008264	0.007622	0.000217	151.000000	867686008	0.997996	0	0.499727	0.020295	0.000299