#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00764/HGDP00764.cram --algo AlignmentStat HGDP/HGDP00764/QCmetrics/HGDP00764.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	407302996	407302996	1.000000	0	405754951	0.996199	60187892138	378285577	56397903419	54456920041	0.000000	0.006284	0.005581	0.000225	151.000000	404490827	0.996885	0	0.499892	0.020729	0.000005	
SECOND_OF_PAIR	407302996	407302996	1.000000	0	404550106	0.993241	58926650690	376299196	55358053822	51417872101	0.000000	0.011286	0.010530	0.000213	151.000000	404490827	0.999853	0	0.499655	0.022001	0.003389	
PAIR	814605992	814605992	1.000000	0	810305057	0.994720	119114542828	754584773	111755957241	105874792142	0.000000	0.008758	0.008032	0.000219	151.000000	808981654	0.998367	0	0.499773	0.021364	0.001697