#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00765/HGDP00765.cram --algo AlignmentStat HGDP/HGDP00765/QCmetrics/HGDP00765.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	434375066	434375066	1.000000	0	434058560	0.999271	64807913353	407819573	61185686116	59813121891	0.000000	0.005296	0.004664	0.000222	151.000000	432232936	0.995794	0	0.499955	0.019768	0.000002	
SECOND_OF_PAIR	434375066	434375066	1.000000	0	432263150	0.995138	63293943163	405139251	59872721924	55975590821	0.000000	0.010945	0.010287	0.000210	151.000000	432232936	0.999930	0	0.499624	0.021236	0.000463	
PAIR	868750132	868750132	1.000000	0	866321710	0.997205	128101856516	812958824	121058408040	115788712712	0.000000	0.008087	0.007445	0.000216	151.000000	864465872	0.997858	0	0.499790	0.020501	0.000233