#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00766/HGDP00766.cram --algo AlignmentStat HGDP/HGDP00766/QCmetrics/HGDP00766.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398898373	398898373	1.000000	0	398468556	0.998922	59438562330	372061252	55787311992	54286173557	0.000000	0.005143	0.004390	0.000225	151.000000	396513867	0.995094	0	0.499936	0.020810	0.000002	
SECOND_OF_PAIR	398898373	398898373	1.000000	0	396550577	0.994114	57917907711	369319502	54451155733	50448637763	0.000000	0.011257	0.010497	0.000214	151.000000	396513867	0.999907	0	0.499540	0.022199	0.000697	
PAIR	797796746	797796746	1.000000	0	795019133	0.996518	117356470041	741380754	110238467725	104734811320	0.000000	0.008160	0.007406	0.000220	151.000000	793027734	0.997495	0	0.499739	0.021503	0.000350