#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00767/HGDP00767.cram --algo AlignmentStat HGDP/HGDP00767/QCmetrics/HGDP00767.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409444842	409444842	1.000000	0	408998006	0.998909	61119005492	381938752	57342723815	56071616406	0.000000	0.004812	0.004083	0.000222	151.000000	406843677	0.994733	0	0.499918	0.020783	0.000003	
SECOND_OF_PAIR	409444842	409444842	1.000000	0	406875452	0.993725	59577291399	378912905	56006319357	52463740801	0.000000	0.010557	0.009772	0.000215	151.000000	406843677	0.999922	0	0.499418	0.022461	0.000810	
PAIR	818889684	818889684	1.000000	0	815873458	0.996317	120696296891	760851657	113349043172	108535357207	0.000000	0.007648	0.006894	0.000218	151.000000	813687354	0.997321	0	0.499668	0.021620	0.000407