#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00768/HGDP00768.cram --algo AlignmentStat HGDP/HGDP00768/QCmetrics/HGDP00768.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424509200	424509200	1.000000	0	424294278	0.999494	63406340975	396261287	59519486831	58108044113	0.000000	0.005013	0.004275	0.000221	151.000000	421186242	0.992675	0	0.500029	0.020947	0.000001	
SECOND_OF_PAIR	424509200	424509200	1.000000	0	421214086	0.992238	61552337739	392185646	57887727322	53830604117	0.000000	0.011879	0.011115	0.000212	151.000000	421186242	0.999934	0	0.499461	0.022416	0.000305	
PAIR	849018400	849018400	1.000000	0	845508364	0.995866	124958678714	788446933	117407214153	111938648230	0.000000	0.008395	0.007647	0.000217	151.000000	842372484	0.996291	0	0.499746	0.021679	0.000153