#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00769/HGDP00769.cram --algo AlignmentStat HGDP/HGDP00769/QCmetrics/HGDP00769.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	511210669	511210669	1.000000	0	510130588	0.997887	76091898777	477557991	71593928172	69739091538	0.000000	0.005174	0.004469	0.000216	151.000000	507996976	0.995818	0	0.499850	0.019004	0.000007	
SECOND_OF_PAIR	511210669	511210669	1.000000	0	508053669	0.993824	74183210397	474376610	69961055337	65085968506	0.000000	0.011529	0.010802	0.000205	151.000000	507996976	0.999888	0	0.499682	0.020748	0.001689	
PAIR	1022421338	1022421338	1.000000	0	1018184257	0.995856	150275109174	951934601	141554983509	134825060044	0.000000	0.008311	0.007599	0.000210	151.000000	1015993952	0.997849	0	0.499766	0.019874	0.000848