#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00779/HGDP00779.cram --algo AlignmentStat HGDP/HGDP00779/QCmetrics/HGDP00779.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403674856	403674856	1.000000	0	403141549	0.998679	60279203059	377798701	56756825100	55653363943	0.000000	0.004849	0.004186	0.000217	151.000000	401585599	0.996140	0	0.499928	0.018990	0.000004	
SECOND_OF_PAIR	403674856	403674856	1.000000	0	401619026	0.994907	58960314857	375426721	55610335847	52100973063	0.000000	0.011334	0.010640	0.000208	151.000000	401585599	0.999917	0	0.499583	0.020469	0.001064	
PAIR	807349712	807349712	1.000000	0	804760575	0.996793	119239517916	753225422	112367160947	107754337006	0.000000	0.008055	0.007380	0.000213	151.000000	803171198	0.998025	0	0.499756	0.019728	0.000534