#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00780/HGDP00780.cram --algo AlignmentStat HGDP/HGDP00780/QCmetrics/HGDP00780.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	455796188	455796188	1.000000	0	454838846	0.997900	68013919081	425140232	63872087568	62693644554	0.000000	0.004603	0.003877	0.000220	151.000000	453305371	0.996629	0	0.499878	0.020745	0.000006	
SECOND_OF_PAIR	455796188	455796188	1.000000	0	453354551	0.994643	66620194584	422679319	62676271843	59076523328	0.000000	0.010089	0.009303	0.000211	151.000000	453305371	0.999892	0	0.499578	0.022436	0.001766	
PAIR	911592376	911592376	1.000000	0	908193397	0.996271	134634113665	847819551	126548359411	121770167882	0.000000	0.007318	0.006564	0.000216	151.000000	906610742	0.998257	0	0.499728	0.021589	0.000886