#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00784/HGDP00784.cram --algo AlignmentStat HGDP/HGDP00784/QCmetrics/HGDP00784.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	405392895	405392895	1.000000	0	404455938	0.997689	60393635266	379098362	56905216369	55732931305	0.000000	0.004837	0.004190	0.000221	151.000000	402884528	0.996115	0	0.499958	0.020343	0.000006	
SECOND_OF_PAIR	405392895	405392895	1.000000	0	402928778	0.993922	59085196861	376681971	55770230322	52339565653	0.000000	0.010681	0.009997	0.000210	151.000000	402884528	0.999890	0	0.499524	0.021956	0.001983	
PAIR	810785790	810785790	1.000000	0	807384716	0.995805	119478832127	755780333	112675446691	108072496958	0.000000	0.007727	0.007064	0.000216	151.000000	805769056	0.997999	0	0.499741	0.021148	0.000995