#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00795/HGDP00795.cram --algo AlignmentStat HGDP/HGDP00795/QCmetrics/HGDP00795.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377660280	377660280	1.000000	0	376963397	0.998155	56326694980	352741760	52966164937	51590803906	0.000000	0.005107	0.004364	0.000219	151.000000	374765396	0.994169	0	0.500042	0.020540	0.000004	
SECOND_OF_PAIR	377660280	377660280	1.000000	0	374797601	0.992420	54542597564	349696273	51402414126	47242296134	1.000000	0.012652	0.011926	0.000207	151.000000	374765396	0.999914	0	0.499416	0.022091	0.001605	
PAIR	755320560	755320560	1.000000	0	751760998	0.995287	110869292544	702438033	104368579063	98833100040	0.000000	0.008819	0.008088	0.000213	151.000000	749530792	0.997033	0	0.499730	0.021313	0.000805