#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00799/HGDP00799.cram --algo AlignmentStat HGDP/HGDP00799/QCmetrics/HGDP00799.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409461299	409461299	1.000000	0	407308885	0.994743	60750978106	383647708	57475788430	55664068513	0.000000	0.005679	0.005078	0.000213	151.000000	405352495	0.995197	0	0.500095	0.018405	0.000012	
SECOND_OF_PAIR	409461299	409461299	1.000000	0	405408736	0.990103	58919602989	380715243	55842290284	51093092014	1.000000	0.013123	0.012522	0.000202	151.000000	405352495	0.999861	0	0.499376	0.019959	0.004934	
PAIR	818922598	818922598	1.000000	0	812717621	0.992423	119670581095	764362951	113318078714	106757160527	0.000000	0.009344	0.008746	0.000207	151.000000	810704990	0.997524	0	0.499737	0.019180	0.002473