#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00802/HGDP00802.cram --algo AlignmentStat HGDP/HGDP00802/QCmetrics/HGDP00802.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	430224108	430224108	1.000000	0	429125785	0.997447	64148065382	403621302	60614621976	59066372431	0.000000	0.005155	0.004525	0.000215	151.000000	427695987	0.996668	0	0.500031	0.019085	0.000005	
SECOND_OF_PAIR	430224108	430224108	1.000000	0	427738125	0.994222	62596882829	401299865	59255801784	54800620695	0.000000	0.012023	0.011390	0.000201	151.000000	427695987	0.999901	0	0.499557	0.020638	0.002237	
PAIR	860448216	860448216	1.000000	0	856863910	0.995834	126744948211	804921167	119870423760	113866993126	0.000000	0.008547	0.007919	0.000208	151.000000	855391974	0.998282	0	0.499794	0.019860	0.001121