#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00804/HGDP00804.cram --algo AlignmentStat HGDP/HGDP00804/QCmetrics/HGDP00804.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436417639	436417639	1.000000	0	435213512	0.997241	65074556195	407691186	61238832304	59689260156	0.000000	0.004988	0.004272	0.000216	151.000000	433957025	0.997113	0	0.500071	0.019457	0.000007	
SECOND_OF_PAIR	436417639	436417639	1.000000	0	434008457	0.994480	63617428454	405540331	59976279784	55718694236	0.000000	0.011165	0.010421	0.000206	151.000000	433957025	0.999881	0	0.499408	0.020952	0.002481	
PAIR	872835278	872835278	1.000000	0	869221969	0.995860	128691984649	813231517	121215112088	115407954392	0.000000	0.008041	0.007314	0.000211	151.000000	867914050	0.998495	0	0.499740	0.020204	0.001244