#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00810/HGDP00810.cram --algo AlignmentStat HGDP/HGDP00810/QCmetrics/HGDP00810.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409064684	409064684	1.000000	0	408760368	0.999256	61058348526	381966448	57345177963	55737170601	0.000000	0.005720	0.004977	0.000221	151.000000	407286425	0.996394	0	0.500011	0.021027	0.000002	
SECOND_OF_PAIR	409064684	409064684	1.000000	0	407314172	0.995721	59536764400	379634996	56023989573	51891167103	0.000000	0.012125	0.011369	0.000209	151.000000	407286425	0.999932	0	0.499445	0.022524	0.000536	
PAIR	818129368	818129368	1.000000	0	816074540	0.997488	120595112926	761601444	113369167536	107628337704	0.000000	0.008882	0.008136	0.000215	151.000000	814572850	0.998160	0	0.499728	0.021775	0.000269