#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00812/HGDP00812.cram --algo AlignmentStat HGDP/HGDP00812/QCmetrics/HGDP00812.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	445963614	445963614	1.000000	0	445554616	0.999083	66611911662	417677477	62771865574	61700253449	0.000000	0.004424	0.003777	0.000223	151.000000	444147637	0.996842	0	0.499823	0.019042	0.000002	
SECOND_OF_PAIR	445963614	445963614	1.000000	0	444182043	0.996005	65332738969	415446685	61680939380	58335095961	0.000000	0.009912	0.009230	0.000212	151.000000	444147637	0.999923	0	0.499676	0.020360	0.000683	
PAIR	891927228	891927228	1.000000	0	889736659	0.997544	131944650631	833124162	124452804954	120035349410	0.000000	0.007142	0.006480	0.000218	151.000000	888295274	0.998380	0	0.499750	0.019700	0.000343