#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00813/HGDP00813.cram --algo AlignmentStat HGDP/HGDP00813/QCmetrics/HGDP00813.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394871842	394871842	1.000000	0	394267550	0.998470	58943281147	371220448	55771102656	54704035191	0.000000	0.004692	0.004077	0.000217	151.000000	393166079	0.997206	0	0.499969	0.017960	0.000003	
SECOND_OF_PAIR	394871842	394871842	1.000000	0	393200410	0.995767	57867770795	369404932	54849975713	51828306112	0.000000	0.010038	0.009396	0.000207	151.000000	393166079	0.999913	0	0.499585	0.019376	0.001252	
PAIR	789743684	789743684	1.000000	0	787467960	0.997118	116811051942	740625380	110621078369	106532341303	0.000000	0.007340	0.006714	0.000212	151.000000	786332158	0.998558	0	0.499777	0.018667	0.000628